pfastq-dump 软件的安装以及测试
001、官网：https://github.com/inutano/pfastq-dump
002、下载最新版
wget -c https://github.com/inutano/pfastq-dump/archive/refs/tags/v0.1.6.tar.gz
tar -xzvf pfastq-dump-0.1.6.tar.gz
cd pfastq-dump-0.1.6/bin/
chmod +x pfastq-dump
003、调用测试
(base) [b20223040323@admin2 bin]$ ./pfastq-dump
004、拆分sra文件测试：
[b20223040323@admin2 test7]$ ls SRR1770413 [b20223040323@admin2 test7]$ pfastq-dump --threads 8 --gzip --split-files --outdir ./ -s ./SRR1770413 Using sra-stat : 3.0.0 Using "fastq-dump" version 3.0.0 tmpdir: /public/home/b20223040323/test7 outdir: ./ blocks: 1,80406 80407,160812 160813,241218 241219,321624 321625,402030 402031,482436 482437,562842 562843,643253 Read 80406 spots for ./SRR1770413 Written 80406 spots for ./SRR1770413 Read 80406 spots for ./SRR1770413 Written 80406 spots for ./SRR1770413 Read 80411 spots for ./SRR1770413 Written 80411 spots for ./SRR1770413 Read 80406 spots for ./SRR1770413 Written 80406 spots for ./SRR1770413 Read 80406 spots for ./SRR1770413 Written 80406 spots for ./SRR1770413 Read 80406 spots for ./SRR1770413 Written 80406 spots for ./SRR1770413 Read 80406 spots for ./SRR1770413 Written 80406 spots for ./SRR1770413 Read 80406 spots for ./SRR1770413 Written 80406 spots for ./SRR1770413 [b20223040323@admin2 test7]$ ls SRR1770413 SRR1770413_1.fastq.gz SRR1770413_2.fastq.gz
。
